JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT6_chr12_51346252_51396406	0/0	t0060	3435	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0061	3434	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0062	3434	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0063	3437	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0064	3437	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0065	3436	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0066	3435	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0067	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0068	3439	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0069	3439	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0070	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0071	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0072	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0073	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0074	3438	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0075	3438	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0076	3436	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0077	3436	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0078	3439	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0079	3434	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0080	3438	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0081	3438	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0082	3437	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0083	3437	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0084	3435	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0085	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0086	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0087	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0088	3437	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0089	3437	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0090	3436	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0091	3435	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	t0092	3435	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT7_chr4_173163811_173328967	1/1	t0001	2276	193	57	48	55	9	22	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0002	2278	40	13	2	22	0	3	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0003	2277	10	7	2	0	0	1	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0004	2277	3	0	2	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0005	2276	3	3	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0006	2277	3	3	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0007	2276	2	2	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0008	2278	2	0	0	2	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0009	2276	2	2	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0010	2276	2	0	1	0	1	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0011	2276	2	2	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0012	2278	1	0	0	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0013	2277	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0014	2276	1	0	1	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	t0015	2276	1	0	0	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT8_chr12_4715400_4777726	1/0	t0001	408	170	42	25	79	4	19	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0002	408	125	31	29	47	5	13	copy fasta	GALNT8	chr12	4715400	4777726