JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALNT8_chr12_4715400_4777726	0/1	t0003	408	30	8	10	6	1	4	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0004	408	4	0	0	0	0	4	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0005	430	4	4	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0006	430	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0007	408	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	t0008	430	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT9_chr12_132191372_132334589	0/1	t0001	1122	143	33	39	54	5	11	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0002	1122	16	0	1	13	1	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0003	1122	7	6	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0004	1122	5	0	0	3	0	2	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0005	1122	2	2	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0006	1122	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0007	1122	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0008	1122	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0009	1122	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0010	1122	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0011	1122	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0012	1122	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0013	1122	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0014	1103	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	t0015	1122	1	0	0	0	0	1	copy fasta	GALNT9	chr12	132191372	132334589
GALNTL5_chr7_151951446_152024929	0/0	t0001	332	265	56	63	101	10	35	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	1/1	t0002	332	112	31	13	53	2	11	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	t0003	332	6	6	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	t0004	332	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL6_chr4_171808404_173046559	0/0	t0001	2216	15	10	0	2	2	1	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0002	2216	12	11	0	0	0	1	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0003	2216	3	3	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0004	2217	2	2	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0005	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0006	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0007	2217	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0008	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0009	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0010	2217	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0011	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALNTL6_chr4_171808404_173046559	0/0	t0012	2216	1	1	0	0	0	0	copy fasta	GALNTL6	chr4	171808404	173046559
GALP_chr19_56171008_56190775	1/0	t0001	600	233	28	49	103	14	38	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0002	600	67	0	7	60	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/1	t0003	600	67	46	7	7	3	3	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0004	600	16	0	5	10	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0005	800	11	1	3	3	1	3	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0006	850	7	0	0	7	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0007	800	4	0	0	4	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0008	584	3	3	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0009	600	3	2	1	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0010	600	3	3	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0011	800	3	0	0	3	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0012	1400	3	0	0	3	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0013	600	2	2	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775