JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALP_chr19_56171008_56190775	0/0	t0014	600	2	2	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0015	700	2	1	1	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0016	650	2	2	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0017	650	2	0	2	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0018	650	2	0	0	2	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0019	650	1	0	1	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0020	700	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0021	650	1	1	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0022	650	1	0	1	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0023	650	1	1	0	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0024	800	1	0	0	0	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0025	900	1	0	0	0	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0026	950	1	0	0	0	0	1	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0027	1000	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0028	1050	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0029	700	1	0	1	0	0	0	copy fasta	GALP	chr19	56171008	56190775
GALP_chr19_56171008_56190775	0/0	t0030	586	1	0	0	1	0	0	copy fasta	GALP	chr19	56171008	56190775
GALR1_chr18_77244848_77282900	0/0	t0001	9695	21	0	3	16	0	2	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0002	9696	21	1	6	9	1	4	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0003	9696	18	5	2	8	0	3	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0004	9697	18	2	6	7	0	3	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0005	9696	11	3	0	7	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0006	9695	11	0	3	4	4	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0007	9698	10	0	4	4	1	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0008	9697	9	2	1	6	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0009	9696	7	1	2	3	1	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0010	9697	6	1	0	4	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0011	9696	6	0	0	5	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0012	9694	6	0	2	4	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	1/0	t0013	9700	5	4	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0014	9694	5	5	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0015	9698	5	1	0	4	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0016	9694	5	0	0	5	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0017	9696	5	0	2	3	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0018	9694	5	0	0	4	1	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/1	t0019	9697	5	1	1	2	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0020	9701	4	4	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0021	9696	4	4	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0022	9699	4	1	2	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0023	9696	4	0	0	4	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0024	9690	3	0	0	3	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0025	9699	3	3	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0026	9696	3	0	0	2	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0027	9696	3	0	0	1	0	2	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0028	9698	3	3	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0029	9695	3	0	1	0	2	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0030	9696	3	0	1	0	1	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0031	9698	3	3	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0032	9696	3	0	0	3	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0033	9697	2	1	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900