Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH3A2_chr17_19643751_19682596	0/0	t0020	2246	1	0	0	0	0	1	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3B1_chr11_68005327_68034276	1/1	t0001	1404	127	7	28	62	6	22	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0002	1401	71	26	11	30	0	4	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0003	1403	68	41	7	15	2	3	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0004	1402	46	5	9	19	6	7	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0005	1401	12	0	0	12	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0006	1405	8	0	2	3	0	3	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0007	1402	6	0	0	6	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0008	1403	3	3	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0009	1401	3	1	0	1	0	1	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0010	1402	3	0	0	3	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0011	1404	2	0	0	0	0	2	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0012	1402	2	2	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0013	1404	2	0	0	2	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0014	1403	2	0	0	1	0	1	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0015	1402	2	0	0	1	0	1	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0016	1402	2	2	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0017	1402	2	0	2	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0018	1401	2	0	2	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0019	1401	2	0	0	0	2	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0020	1402	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0021	1403	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0022	1404	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0023	1403	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0024	1403	1	0	0	1	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0025	1401	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0026	1403	1	0	0	1	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0027	1403	1	0	1	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	t0028	1404	1	0	0	1	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B2_chr11_67657155_67679623	0/1	t0001	1493	307	51	54	148	12	41	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0002	1493	33	9	8	13	1	2	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0003	1493	15	14	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0004	1493	7	5	0	2	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0005	1493	3	3	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0006	1493	3	3	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0007	1493	2	0	0	2	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0008	1493	2	1	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0009	1493	2	1	0	0	1	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0010	1493	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0011	1493	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0012	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0013	1493	1	0	0	0	0	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0014	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0015	1493	1	0	0	0	1	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0016	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0017	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0018	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0019	1493	1	0	0	0	1	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	1/0	t0020	1493	1	0	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0021	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623