JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALR1_chr18_77244848_77282900	0/0	t0084	9696	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0085	9695	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0086	9696	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0087	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0088	9695	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0089	9700	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0090	9699	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0091	9699	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0092	9698	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0093	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0094	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0095	9696	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0096	9699	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0097	9696	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0098	9698	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0099	9699	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0100	9700	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0101	9698	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0102	9698	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0103	9697	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0104	9697	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0105	9694	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0106	9696	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0107	9699	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0108	9698	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0109	9699	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0110	9694	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0111	9694	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0112	9698	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0113	9686	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0114	9690	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0115	9692	1	0	0	0	1	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0116	9700	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0117	9694	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0118	9696	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0119	9697	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0120	9699	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0121	9701	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0122	9695	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0123	9692	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0124	9698	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0125	9698	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0126	9698	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0127	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0128	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0129	9696	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0130	9696	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0131	9696	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0132	9696	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0133	9695	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900