JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GALR1_chr18_77244848_77282900	0/0	t0134	9700	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0135	9694	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0136	9692	1	0	0	0	1	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0137	9698	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0138	9697	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0139	9696	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0140	9696	1	1	0	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0141	9698	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0142	9694	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0143	9697	1	0	0	0	1	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0144	9696	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0145	9696	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0146	9695	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0147	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0148	9697	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0149	9692	1	0	1	0	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0150	9697	1	0	0	0	0	1	copy fasta	GALR1	chr18	77244848	77282900
GALR1_chr18_77244848_77282900	0/0	t0151	9698	1	0	0	1	0	0	copy fasta	GALR1	chr18	77244848	77282900
GALR2_chr17_76069781_76082537	1/0	t0001	210	400	88	65	188	16	42	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	t0002	210	2	2	0	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	t0003	210	2	0	2	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR2_chr17_76069781_76082537	0/0	t0004	210	1	0	1	0	0	0	copy fasta	GALR2	chr17	76069781	76082537
GALR3_chr22_37818382_37830485	1/1	t0001	41	402	90	76	178	14	42	copy fasta	GALR3	chr22	37818382	37830485
GALT_chr9_34641675_34656035	1/1	t0001	617	406	90	73	177	16	48	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	t0002	617	6	5	1	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	t0003	617	2	1	1	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	t0004	617	1	0	0	1	0	0	copy fasta	GALT	chr9	34641675	34656035
GALT_chr9_34641675_34656035	0/0	t0005	617	1	0	1	0	0	0	copy fasta	GALT	chr9	34641675	34656035
GAL_chr11_68679544_68696175	0/0	t0001	378	194	13	40	111	10	20	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	1/1	t0002	378	126	54	27	34	1	8	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0003	378	35	10	6	10	3	6	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0004	378	13	12	1	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0005	378	11	2	4	2	0	3	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0006	379	8	0	0	8	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0007	378	2	2	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0008	378	2	0	0	2	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0009	379	1	0	0	1	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0010	378	1	1	0	0	0	0	copy fasta	GAL	chr11	68679544	68696175
GAL_chr11_68679544_68696175	0/0	t0011	378	1	0	0	0	0	1	copy fasta	GAL	chr11	68679544	68696175
GAMT_chr19_1392026_1406542	1/1	t0001	400	365	64	71	170	18	40	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	t0002	400	23	17	4	0	0	2	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	t0003	400	13	12	1	0	0	0	copy fasta	GAMT	chr19	1392026	1406542
GAMT_chr19_1392026_1406542	0/0	t0004	400	1	1	0	0	0	0	copy fasta	GAMT	chr19	1392026	1406542
GANAB_chr11_62619829_62651613	1/1	t0001	1001	298	89	71	91	11	34	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0002	1001	3	2	1	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0003	1001	2	0	0	2	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0004	1001	1	0	0	0	1	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0005	1001	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0006	1001	1	1	0	0	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANAB_chr11_62619829_62651613	0/0	t0007	1001	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613