JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GANAB_chr11_62619829_62651613	0/0	t0008	1001	1	0	0	1	0	0	copy fasta	GANAB	chr11	62619829	62651613
GANC_chr15_42268201_42358666	1/1	t0001	2809	92	29	15	33	2	11	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0002	2809	41	12	12	13	0	4	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0003	2809	33	13	2	16	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0004	2809	30	1	9	15	0	5	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0005	2808	21	2	8	1	4	6	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0006	2808	6	6	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0007	2807	5	5	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0008	2809	5	0	5	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0009	2809	5	4	1	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0010	2809	4	0	2	0	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0011	2809	4	4	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0012	2808	4	4	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0013	2808	3	3	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0014	2809	2	0	0	0	2	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0015	2809	2	0	0	0	0	2	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0016	2809	2	2	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0017	2809	1	0	0	0	0	1	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0018	2809	1	0	0	0	0	1	copy fasta	GANC	chr15	42268201	42358666
GANC_chr15_42268201_42358666	0/0	t0019	2809	1	1	0	0	0	0	copy fasta	GANC	chr15	42268201	42358666
GAN_chr16_81309962_81395809	0/0	t0001	13366	44	9	13	12	0	10	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0002	13366	27	0	9	18	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0003	13368	16	0	1	15	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0004	13366	13	0	1	12	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0005	13367	12	0	2	6	0	4	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0006	13357	12	0	0	10	0	2	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0007	13366	10	0	0	10	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0008	13367	9	0	4	2	1	2	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	1/0	t0009	13366	9	0	1	2	1	4	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0010	13366	8	8	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0011	13365	8	0	2	4	2	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0012	13365	5	0	0	5	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0013	13357	4	0	0	4	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0014	13363	3	3	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0015	13366	3	1	2	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0016	13367	3	0	1	1	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0017	13367	3	3	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0018	13367	3	3	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0019	13366	3	0	0	3	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0020	13366	3	3	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0021	13366	3	3	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0022	13363	2	0	1	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0023	13363	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0024	13364	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0025	13366	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0026	13368	2	0	2	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0027	13366	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0028	13367	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0029	13367	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0030	13367	2	0	0	1	1	0	copy fasta	GAN	chr16	81309962	81395809