JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAN_chr16_81309962_81395809	0/0	t0031	13366	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0032	13367	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0033	13365	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0034	13368	2	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0035	13366	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0036	13367	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0037	13367	2	0	0	2	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0038	13367	2	0	1	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0039	13368	2	0	0	0	0	2	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0040	13364	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0041	13364	2	2	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0042	13365	2	0	1	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0043	13365	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0044	13363	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0045	13363	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0046	13363	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0047	13364	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0048	13364	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0049	13364	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0050	13367	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/1	t0051	13365	1	0	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0052	13363	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0053	13368	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0054	13367	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0055	13367	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0056	13365	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0057	13366	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0058	13366	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0059	13367	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0060	13367	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0061	13367	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0062	13366	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0063	13366	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0064	13366	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0065	13367	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0066	13366	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0067	13365	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0068	13366	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0069	13366	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0070	13366	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0071	13366	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0072	13366	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0073	13366	1	0	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0074	13367	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0075	13365	1	0	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0076	13367	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0077	13368	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0078	13368	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0079	13366	1	0	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0080	13368	1	0	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809