JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
GAN_chr16_81309962_81395809	0/0	t0081	13366	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0082	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0083	13366	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0084	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0085	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0086	13366	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0087	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0088	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0089	13365	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0090	13367	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0091	13366	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0092	13366	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0093	13366	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0094	12686	1	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0095	13365	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0096	13367	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0097	13367	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0098	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0099	13369	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0100	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0101	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0102	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0103	13368	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0104	13367	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0105	13366	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0106	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0107	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0108	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0109	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0110	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0111	13365	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0112	13366	1	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0113	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0114	13369	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0115	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0116	13367	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0117	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0118	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0119	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0120	13369	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0121	13368	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0122	13367	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0123	13367	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0124	13366	1	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0125	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0126	13366	1	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0127	13366	1	1	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0128	13369	1	0	0	1	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0129	13366	1	0	0	0	1	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0130	13368	1	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809