JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAN_chr16_81309962_81395809	0/0	t0181	13365	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0182	13365	1	1	0	0	0	0	copy fasta	GAN	chr16	81309962	81395809
GAN_chr16_81309962_81395809	0/0	t0183	13357	1	0	0	1	0	0	copy fasta	GAN	chr16	81309962	81395809
GAP43_chr3_115618510_115726483	1/1	t0001	782	138	57	23	32	5	19	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0002	784	102	7	18	66	2	9	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0003	782	43	8	12	6	3	14	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0004	782	31	0	11	20	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0005	783	17	15	2	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0006	785	3	0	0	3	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0007	783	3	0	0	2	0	1	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0008	783	2	0	2	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0009	781	2	0	2	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0010	782	2	2	0	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0011	782	1	0	1	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0012	782	1	0	1	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0013	783	1	1	0	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0014	784	1	0	0	1	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0015	784	1	1	0	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0016	784	1	0	0	1	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0017	782	1	1	0	0	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0018	781	1	0	0	1	0	0	copy fasta	GAP43	chr3	115618510	115726483
GAP43_chr3_115618510_115726483	0/0	t0019	783	1	0	0	0	0	1	copy fasta	GAP43	chr3	115618510	115726483
GAPDHS_chr19_35528456_35550319	1/1	t0001	222	423	92	71	198	12	48	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	t0002	222	3	0	3	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDHS_chr19_35528456_35550319	0/0	t0003	222	2	0	2	0	0	0	copy fasta	GAPDHS	chr19	35528456	35550319
GAPDH_chr12_6529517_6543371	0/0	t0001	278	248	48	57	106	10	27	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0002	278	101	21	15	51	2	12	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0003	278	90	19	12	52	0	7	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0004	278	7	2	1	0	4	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0005	278	3	3	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0006	278	3	3	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0007	278	2	2	0	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0008	278	1	0	0	1	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPDH_chr12_6529517_6543371	0/0	t0009	278	1	0	1	0	0	0	copy fasta	GAPDH	chr12	6529517	6543371
GAPT_chr5_58486435_58502090	1/0	t0001	2606	205	24	32	116	8	24	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0002	2606	47	1	13	15	4	14	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/1	t0003	2606	36	10	9	5	5	6	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0004	2606	21	9	8	0	1	3	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0005	2606	11	11	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0006	2606	10	8	2	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0007	2606	6	0	0	6	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0008	2606	6	6	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0009	2606	6	0	0	6	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0010	2606	4	3	1	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0011	2606	4	4	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0012	2606	3	3	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0013	2606	3	0	0	3	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0014	2605	3	3	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0015	2605	2	2	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0016	2606	2	2	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090