JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAPT_chr5_58486435_58502090	0/0	t0017	2605	2	2	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0018	2606	1	1	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0019	2606	1	0	0	1	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0020	2605	1	0	0	1	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0021	2606	1	0	0	0	0	1	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0022	2605	1	1	0	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0023	2606	1	0	0	1	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPT_chr5_58486435_58502090	0/0	t0024	2606	1	0	1	0	0	0	copy fasta	GAPT	chr5	58486435	58502090
GAPVD1_chr9_125256826_125372207	0/0	t0001	4795	130	34	17	56	4	19	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	1/0	t0002	4794	98	3	13	64	6	11	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0003	4795	20	0	0	19	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0004	4794	13	11	2	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0005	4795	13	0	0	13	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0006	4793	12	9	2	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0007	4794	10	0	5	5	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0008	4794	5	0	5	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0009	4793	3	3	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0010	4795	3	0	1	0	2	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0011	4794	2	1	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0012	4794	2	0	2	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0013	4794	2	1	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/1	t0014	4795	2	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0015	4793	2	0	0	1	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0016	4795	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0017	4794	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0018	4794	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0019	4794	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0020	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0021	4795	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0022	4795	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0023	4795	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0024	4795	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0025	4795	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0026	4793	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0027	4793	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0028	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0029	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0030	4795	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0031	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0032	4795	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0033	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0034	4795	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0035	4795	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0036	4794	1	0	0	1	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0037	4793	1	0	0	0	0	1	copy fasta	GAPVD1	chr9	125256826	125372207
GAPVD1_chr9_125256826_125372207	0/0	t0038	4794	1	0	1	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAR1_chr4_109810762_109829737	1/0	t0001	362	252	53	44	126	5	23	copy fasta	GAR1	chr4	109810762	109829737
GAR1_chr4_109810762_109829737	0/1	t0002	362	163	32	30	70	9	21	copy fasta	GAR1	chr4	109810762	109829737
GAR1_chr4_109810762_109829737	0/0	t0003	360	10	10	0	0	0	0	copy fasta	GAR1	chr4	109810762	109829737
GAR1_chr4_109810762_109829737	0/0	t0004	360	1	1	0	0	0	0	copy fasta	GAR1	chr4	109810762	109829737