JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAREM1_chr18_32258522_32475882	0/1	t0001	4804	66	18	13	25	3	6	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0002	4805	19	3	4	10	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0003	4807	17	12	2	0	2	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0004	4802	12	8	2	0	1	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0005	4806	8	2	1	3	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0006	4806	7	1	3	0	0	3	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0007	4805	5	5	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0008	4801	5	0	0	5	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0009	4805	4	0	1	3	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0010	4802	4	0	3	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0011	4802	4	4	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0012	4808	3	3	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0013	4804	3	0	2	0	1	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0014	4803	3	3	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0015	4806	2	0	1	0	0	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0016	4805	2	0	1	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0017	4807	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0018	4805	2	1	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0019	4804	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0020	4800	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0021	4807	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0022	4801	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0023	4802	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0024	4806	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0025	4808	1	0	0	0	1	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0026	4807	1	0	0	0	1	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0027	4806	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0028	4806	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0029	4807	1	0	1	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0030	4805	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0031	4805	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0032	4805	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0033	4804	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0034	4803	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0035	4803	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0036	4800	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0037	4802	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0038	4802	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	1/0	t0039	4804	1	0	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	t0040	4804	1	0	0	0	1	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM2_chr2_26168088_26194663	0/1	t0001	1540	220	56	61	73	8	21	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0002	1540	42	0	8	22	4	8	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	1/0	t0003	1540	10	2	5	2	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0004	1540	10	10	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0005	1540	8	5	3	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0006	1540	4	4	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0007	1536	3	1	2	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0008	1540	2	2	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0009	1540	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0010	1563	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663