Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCG1_chr21_42214140_42302244	0/0	t0019	970	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0020	971	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0021	973	1	0	0	1	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0022	973	1	0	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0023	974	1	0	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0024	975	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0025	977	1	0	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0026	979	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0027	976	1	0	1	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0028	982	1	0	0	0	0	1	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0029	982	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0030	994	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG1_chr21_42214140_42302244	0/0	t0031	996	1	1	0	0	0	0	copy fasta	ABCG1	chr21	42214140	42302244
ABCG2_chr4_88085269_88163639	1/1	t0001	2239	277	73	65	98	9	30	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0002	2239	36	0	4	29	1	2	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0003	2240	10	0	0	10	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0004	2239	8	3	1	0	0	4	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0005	2239	3	1	2	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0006	2239	3	3	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0007	2239	3	0	0	3	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0008	2239	2	0	0	2	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0009	2239	1	0	0	0	0	1	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0010	2239	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0011	2239	1	0	0	0	0	1	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0012	2239	1	0	0	0	0	1	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0013	2239	1	0	1	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0014	2239	1	0	0	0	0	1	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0015	2239	1	0	1	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	t0016	2239	1	1	0	0	0	0	copy fasta	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	0/0	t0001	1872	147	15	21	90	4	17	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	1/1	t0002	1872	129	41	37	31	9	9	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0003	1872	75	29	4	27	1	14	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0004	1872	8	0	0	8	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0005	1872	5	2	2	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0006	1872	5	5	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0007	1872	3	3	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0008	1872	3	3	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0009	1872	2	2	0	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0010	1872	2	0	1	0	1	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0011	1872	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0012	1872	1	0	0	0	1	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0013	1872	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0014	1872	1	0	0	0	0	1	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0015	1872	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0016	1872	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0017	1872	1	0	0	1	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0018	1872	1	0	0	0	0	1	copy fasta	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	t0019	1872	1	0	1	0	0	0	copy fasta	ABCG4	chr11	119144052	119167653
ABCG5_chr2_43807472_43843839	1/1	t0001	805	171	20	42	74	9	24	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0002	805	80	33	20	14	3	10	copy fasta	ABCG5	chr2	43807472	43843839