Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH3B2_chr11_67657155_67679623	0/0	t0022	1520	1	0	0	1	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0023	1493	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	t0024	1493	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH4A1_chr1_18866430_18907555	0/0	t0001	1447	197	17	36	119	5	20	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	1/1	t0002	1448	100	22	18	40	2	16	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0003	1448	22	3	7	1	9	2	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0004	1448	12	10	1	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0005	1448	11	8	3	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0006	1447	6	6	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0007	1448	6	0	0	6	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0008	1447	5	0	2	0	0	3	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0009	1448	4	4	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0010	1448	4	1	3	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0011	1448	3	3	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0012	1437	3	3	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0013	1447	3	0	3	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0014	1448	3	0	2	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0015	1448	3	1	1	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0016	1447	2	0	2	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0017	1448	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0018	1448	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0019	1448	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0020	1447	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0021	1447	1	0	0	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0022	1448	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0023	1448	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0024	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0025	1448	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0026	1447	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0027	1447	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0028	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0029	1448	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0030	1447	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0031	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0032	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0033	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0034	1447	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	t0035	1448	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH5A1_chr6_24489969_24542207	1/1	t0001	3524	200	7	36	121	6	28	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0002	3524	72	24	12	19	3	14	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0003	3524	26	19	3	2	0	2	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0004	3524	13	12	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0005	3524	6	6	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0006	3524	6	1	4	0	0	1	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0007	3524	6	5	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0008	3524	5	0	5	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0009	3524	4	3	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0010	3524	4	4	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0011	3523	3	1	1	0	0	1	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0012	3524	2	0	1	0	1	0	copy fasta	ALDH5A1	chr6	24489969	24542207