JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAREM2_chr2_26168088_26194663	0/0	t0011	1540	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0012	1540	1	0	0	0	0	1	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0013	1540	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0014	1540	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	t0015	1540	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GARIN1A_chr7_128667292_128692877	0/1	t0001	4822	56	5	8	36	3	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0002	4833	48	1	7	38	1	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0003	4831	42	2	6	24	1	9	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0004	4830	38	5	3	16	2	12	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0005	4824	32	12	6	9	2	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0006	4831	23	12	6	2	0	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0007	4831	20	5	5	8	2	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0008	4834	13	1	1	9	0	2	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0009	4832	7	1	0	4	0	2	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0010	4837	7	0	4	1	0	2	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0011	4829	7	0	5	0	0	2	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0012	4835	6	0	1	2	3	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	1/0	t0013	4825	6	5	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0014	4823	6	1	0	5	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0015	4825	6	6	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0016	4839	5	0	4	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0017	4822	5	0	5	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0018	4839	4	4	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0019	4825	4	3	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0020	4831	3	1	2	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0021	4828	3	3	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0022	4830	3	0	0	3	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0023	4839	2	2	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0024	4837	2	2	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0025	4831	2	2	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0026	4826	2	2	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0027	4823	2	0	0	2	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0028	4821	2	0	0	1	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0029	4822	2	1	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0030	4823	2	0	0	2	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0031	4826	2	0	0	2	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0032	4838	2	0	2	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0033	4833	2	0	2	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0034	4828	2	0	0	2	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0035	4830	2	0	1	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0036	4829	2	2	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0037	4843	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0038	4837	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0039	4843	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0040	4839	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0041	4832	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0042	4831	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0043	4832	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0044	4831	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0045	4831	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877