JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GARIN1A_chr7_128667292_128692877	0/0	t0046	4832	1	0	0	0	1	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0047	4830	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0048	4835	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0049	4831	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0050	4832	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0051	4831	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0052	4830	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0053	4831	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0054	4827	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0055	4826	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0056	4826	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0057	4825	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0058	4825	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0059	4825	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0060	4825	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0061	4824	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0062	4823	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0063	4823	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0064	4824	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0065	4823	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0066	4824	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0067	4822	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0068	4821	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0069	4835	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0070	4822	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0071	4827	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0072	4832	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0073	4831	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0074	4840	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0075	4835	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0076	4834	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0077	4834	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0078	4834	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0079	4830	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0080	4835	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0081	4833	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0082	4832	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0083	4833	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0084	4834	1	0	0	0	0	1	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0085	4833	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0086	4830	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0087	4830	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0088	4830	1	0	0	0	1	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0089	4831	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0090	4826	1	0	1	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0091	4826	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	t0092	4826	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1B_chr7_128710391_128736743	1/0	t0001	682	132	25	24	56	9	17	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/1	t0002	682	95	13	10	66	1	4	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0003	682	63	2	16	41	0	4	copy fasta	GARIN1B	chr7	128710391	128736743