JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GARIN1B_chr7_128710391_128736743	0/0	t0004	682	57	11	15	21	1	9	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0005	682	34	22	7	2	0	3	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0006	682	20	19	1	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0007	682	16	0	7	2	2	5	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0008	682	11	0	0	10	1	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0009	682	5	0	0	5	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0010	682	4	4	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0011	682	4	0	2	0	0	2	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0012	682	2	0	0	0	0	2	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0013	682	2	0	0	2	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0014	682	2	0	0	2	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0015	682	2	0	2	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0016	682	1	1	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0017	682	1	1	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	t0018	682	1	0	0	1	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN2_chr14_67184440_67228940	1/1	t0001	367	329	91	66	146	4	20	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	t0002	367	3	3	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN3_chr5_157156846_157171264	1/1	t0001	698	221	25	43	123	6	22	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0002	698	98	62	18	7	4	7	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0003	698	65	2	5	47	2	9	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0004	698	5	5	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0005	698	2	0	0	0	0	2	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0006	698	2	0	2	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0007	698	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0008	698	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	t0009	698	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN4_chr1_212619474_212631775	0/1	t0001	518	250	60	45	98	15	31	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	1/0	t0002	518	206	30	31	128	3	13	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	t0003	518	14	6	4	0	0	4	copy fasta	GARIN4	chr1	212619474	212631775
GARIN5A_chr19_50461788_50481848	1/1	t0001	632	409	92	74	175	18	48	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	t0002	632	1	0	0	1	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	t0003	632	1	0	0	1	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	t0004	632	1	1	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	t0005	632	1	0	0	1	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	t0006	632	1	1	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5B_chr19_55349908_55368260	1/1	t0001	423	202	55	37	85	7	16	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0002	424	129	27	27	47	5	23	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0003	425	16	5	4	3	2	2	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0004	423	5	5	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0005	424	1	0	0	0	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0006	423	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0007	423	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	t0008	425	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN6_chr12_99642753_99655114	0/0	t0001	1139	154	18	22	98	2	14	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0002	1139	112	18	15	66	4	9	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0003	1139	60	25	23	3	4	5	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/1	t0004	1138	34	4	13	1	4	11	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0005	1138	25	0	0	25	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	1/0	t0006	1139	15	1	4	4	1	4	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0007	1138	9	0	0	9	0	0	copy fasta	GARIN6	chr12	99642753	99655114