JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GARIN6_chr12_99642753_99655114	0/0	t0008	1116	9	9	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0009	1138	5	5	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0010	1138	4	1	1	2	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0011	1139	3	3	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0012	1139	3	1	0	0	1	1	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0013	1139	3	0	0	3	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0014	1138	3	3	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0015	1139	3	3	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0016	1139	2	0	0	2	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0017	1138	2	2	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0018	1138	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0019	1139	1	0	0	1	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0020	1138	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0021	1138	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0022	1138	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0023	1139	1	0	0	1	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0024	1138	1	0	0	0	0	1	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0025	1139	1	0	0	1	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0026	1139	1	0	0	0	0	1	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	t0027	1138	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARNL3_chr9_127259774_127398660	1/1	t0001	511	298	75	48	132	15	26	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	t0002	511	1	0	0	0	1	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	t0003	511	1	1	0	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARRE1_chr19_34249554_34360566	0/1	t0001	3460	195	50	28	84	7	25	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	1/0	t0002	3468	66	10	13	30	5	7	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0003	3468	19	4	14	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0004	3460	10	10	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0005	3462	6	0	1	5	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0006	3460	3	3	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0007	3460	3	2	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0008	3460	2	2	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0009	3460	2	0	0	2	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0010	3468	2	0	0	2	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0011	3468	2	1	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0012	3474	2	0	0	0	0	2	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0013	3468	2	0	2	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0014	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0015	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0016	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0017	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0018	3460	1	0	0	1	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0019	3460	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0020	3460	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0021	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0022	3460	1	1	0	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0023	3474	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0024	3468	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	t0025	3468	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARS1_chr7_30589878_30639033	1/0	t0001	218	172	54	29	69	6	13	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/1	t0002	217	149	28	28	67	10	15	copy fasta	GARS1	chr7	30589878	30639033