JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GARS1_chr7_30589878_30639033	0/0	t0003	216	80	10	10	46	0	14	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	t0004	217	1	0	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GART_chr21_33498933_33547117	1/1	t0001	286	383	95	70	158	16	42	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	t0002	286	1	1	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GAS1_chr9_86939362_86952506	1/0	t0001	2108	144	15	28	72	9	19	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0002	2108	138	42	12	68	4	12	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0003	2108	49	2	4	36	2	5	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0004	2108	29	3	13	13	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0005	2108	17	8	6	0	3	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0006	2108	16	0	6	10	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0007	2108	14	6	7	0	0	1	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0008	2108	4	4	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0009	2108	3	3	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0010	2108	3	0	0	3	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/1	t0011	2108	2	0	1	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0012	2108	2	2	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0013	2108	2	0	0	2	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0014	2108	2	0	0	2	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0015	2108	2	2	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0016	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0017	2108	1	0	0	0	0	1	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0018	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0019	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0020	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0021	2108	1	0	0	1	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0022	2108	1	0	0	1	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0023	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0024	2108	1	0	1	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0025	2108	1	0	0	1	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0026	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0027	2108	1	1	0	0	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	t0028	2108	1	0	0	1	0	0	copy fasta	GAS1	chr9	86939362	86952506
GAS2L1_chr22_29301650_29317787	0/0	t0001	814	183	26	16	114	4	23	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/1	t0002	814	132	13	34	63	7	14	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	1/0	t0003	814	42	8	14	10	2	7	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0004	814	38	32	6	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0005	814	8	4	0	2	0	2	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0006	814	7	1	0	3	1	2	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0007	814	6	6	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0008	814	2	1	0	0	1	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0009	814	2	2	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0010	814	1	0	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0011	814	1	1	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0012	814	1	0	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	t0013	814	1	0	0	0	1	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L2_chr17_35739511_35758239	1/1	t0001	733	260	49	43	124	15	27	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0002	733	52	35	4	3	0	10	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0003	733	35	0	0	30	1	4	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0004	733	25	2	23	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0005	733	21	0	0	20	0	1	copy fasta	GAS2L2	chr17	35739511	35758239