JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAS2L2_chr17_35739511_35758239	0/0	t0006	733	15	0	4	10	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0007	733	10	0	0	10	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0008	733	5	5	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0009	733	5	4	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0010	733	3	1	2	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0011	733	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0012	733	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0013	733	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0014	733	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	t0015	733	1	0	0	0	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L3_chr12_100568684_100633288	0/0	t0001	3652	105	13	21	61	2	8	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	1/1	t0002	3652	70	25	10	15	7	11	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0003	3652	67	6	15	33	3	10	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0004	3653	64	0	9	44	2	9	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0005	3651	39	7	11	16	2	3	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0006	3652	5	5	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0007	3651	4	0	0	4	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0008	3652	4	0	0	4	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0009	3653	4	4	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0010	3653	3	3	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0011	3653	3	1	1	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0012	3651	3	3	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0013	3651	3	3	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0014	3652	2	2	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0015	3652	2	0	0	1	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0016	3652	2	2	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0017	3652	2	2	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0018	3653	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0019	3651	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0020	3651	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0021	3653	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0022	3652	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0023	3653	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0024	3653	1	0	0	0	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0025	3636	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0026	3652	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0027	3652	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0028	3652	1	0	1	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0029	3652	1	0	0	0	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0030	3652	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0031	3651	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0032	3652	1	0	0	0	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0033	3652	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0034	3665	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0035	3652	1	0	0	0	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0036	3653	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	t0037	3651	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2_chr11_22661611_22818001	0/0	t0001	1296	67	14	5	41	1	6	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0002	1298	64	16	19	19	3	7	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0003	1296	54	4	10	36	1	3	copy fasta	GAS2	chr11	22661611	22818001