JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAS2_chr11_22661611_22818001	0/1	t0004	1297	21	4	5	9	1	1	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0005	1297	14	11	2	1	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0006	1294	12	12	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	1/0	t0007	1295	10	5	3	0	0	1	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0008	1299	8	6	2	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0009	1296	6	5	0	1	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0010	1294	5	5	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0011	1295	2	0	0	2	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0012	1295	2	0	0	2	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0013	1298	1	0	0	0	0	1	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0014	1297	1	0	0	1	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0015	1296	1	0	0	0	0	1	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0016	1297	1	1	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0017	1297	1	0	0	1	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0018	1299	1	1	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	t0019	1296	1	0	0	1	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS6_chr13_113815549_113869076	1/0	t0001	472	136	31	29	49	10	16	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	t0002	472	2	0	2	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	t0003	478	2	2	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	t0004	472	2	1	1	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	t0005	472	1	0	0	1	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS7_chr17_9905606_10203606	1/0	t0001	6839	49	5	13	17	4	9	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0002	6839	39	1	13	17	3	5	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0003	6839	12	8	4	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0004	6839	5	5	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0005	6839	5	0	4	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0006	6839	5	5	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0007	6840	4	4	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0008	6839	4	0	1	3	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0009	6839	4	4	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0010	6840	3	3	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0011	6840	3	3	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0012	6840	3	3	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/1	t0013	6840	3	0	1	0	1	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0014	6838	3	0	0	2	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0015	6839	3	1	0	1	1	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0016	6839	3	3	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0017	6840	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0018	6839	2	0	2	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0019	6839	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0020	6838	2	0	0	2	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0021	6839	2	0	2	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0022	6839	2	0	1	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0023	6839	2	0	1	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0024	6838	2	1	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0025	6839	2	0	1	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0026	6839	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0027	6839	2	0	1	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0028	6839	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0029	6839	2	0	0	2	0	0	copy fasta	GAS7	chr17	9905606	10203606