JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAS7_chr17_9905606_10203606	0/0	t0030	6839	2	2	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0031	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0032	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0033	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0034	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0035	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0036	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0037	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0038	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0039	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0040	6840	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0041	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0042	6840	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0043	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0044	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0045	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0046	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0047	6839	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0048	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0049	6839	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0050	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0051	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0052	6839	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0053	6839	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0054	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0055	6839	1	0	0	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0056	6839	1	0	0	0	1	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0057	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0058	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0059	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0060	6839	1	0	0	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0061	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0062	6839	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0063	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0064	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0065	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0066	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0067	6839	1	0	1	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0068	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0069	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0070	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0071	6839	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	t0072	6839	1	0	0	1	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS8_chr16_90017680_90049960	1/1	t0001	1658	123	23	34	32	11	21	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0002	1659	104	6	23	69	2	4	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0003	1659	33	16	10	1	2	4	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0004	1663	23	0	4	18	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0005	1659	18	1	4	9	0	4	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0006	1659	15	14	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0007	1658	12	0	0	7	0	5	copy fasta	GAS8	chr16	90017680	90049960