JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GAS8_chr16_90017680_90049960	0/0	t0008	1659	6	0	0	6	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0009	1659	4	4	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0010	1658	4	1	1	0	1	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0011	1658	4	3	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0012	1659	3	3	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0013	1658	3	3	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0014	1664	2	0	0	2	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0015	1659	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0016	1665	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0017	1658	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0018	1658	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0019	1658	2	2	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0020	1663	2	0	0	2	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0021	1663	2	0	0	0	0	2	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0022	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0023	1658	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0024	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0025	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0026	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0027	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0028	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0029	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0030	1665	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0031	1664	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0032	1659	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0033	1659	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0034	1659	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0035	1659	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0036	1659	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0037	1663	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0038	1658	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0039	1658	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0040	1690	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0041	1658	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0042	1658	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	t0043	1659	1	0	0	1	0	0	copy fasta	GAS8	chr16	90017680	90049960
GASK1A_chr3_42974311_43062715	0/0	t0001	1663	127	26	28	63	2	8	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/1	t0002	1662	76	27	7	25	2	14	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0003	1661	62	1	16	27	4	14	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0004	1663	22	9	8	0	2	3	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	1/0	t0005	1662	12	9	1	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0006	1662	8	0	0	8	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0007	1662	4	3	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0008	1663	4	4	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0009	1662	4	3	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0010	1662	3	3	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0011	1662	2	2	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0012	1663	2	1	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0013	1663	2	0	0	0	2	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0014	1662	2	1	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715