JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GASK1A_chr3_42974311_43062715	0/0	t0015	1662	2	1	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0016	1663	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0017	1662	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0018	1663	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0019	1662	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0020	1663	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0021	1663	1	0	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0022	1661	1	0	1	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0023	1662	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0024	1661	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	t0025	1662	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1B_chr4_158119474_158178025	0/0	t0001	3315	134	33	22	63	2	14	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/1	t0002	3316	62	4	19	33	1	4	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	1/0	t0003	3316	29	11	5	4	1	7	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0004	3315	12	12	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0005	3316	10	1	6	2	1	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0006	3316	8	7	0	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0007	3315	3	0	1	0	1	1	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0008	3316	3	3	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0009	3316	2	0	0	2	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0010	3315	2	0	1	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0011	3316	2	0	1	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0012	3316	2	0	0	2	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0013	3316	2	1	1	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0014	3316	2	2	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0015	3316	2	2	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0016	3316	2	2	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0017	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0018	3316	1	0	0	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0019	3315	1	0	0	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0020	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0021	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0022	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0023	3315	1	0	0	0	0	1	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0024	3315	1	0	0	1	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0025	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0026	3315	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0027	3316	1	0	0	0	0	1	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0028	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0029	3316	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0030	3315	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	t0031	3315	1	1	0	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GAST_chr17_41707331_41720969	1/1	t0001	160	379	74	73	170	18	42	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	0/0	t0002	160	17	16	1	0	0	0	copy fasta	GAST	chr17	41707331	41720969
GATA1_chrX_48781590_48799311	1/1	t0001	223	266	76	47	106	9	26	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	t0002	223	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	t0003	223	1	0	1	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA2_chr3_128474427_128493530	0/0	t0001	2028	104	13	14	65	2	10	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0002	2028	104	32	20	32	6	14	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	1/1	t0003	2028	93	11	22	41	3	14	copy fasta	GATA2	chr3	128474427	128493530