Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH5A1_chr6_24489969_24542207	0/0	t0013	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0014	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0015	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0016	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0017	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0018	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0019	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0020	3524	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0021	3524	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0022	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0023	3524	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0024	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0025	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0026	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0027	3524	1	0	0	0	0	1	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0028	3524	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0029	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0030	3524	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0031	3524	1	0	0	0	0	1	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0032	3524	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	t0033	3524	1	0	0	1	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH6A1_chr14_74051847_74089453	0/0	t0001	3855	129	16	28	68	6	11	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0002	3857	53	1	8	36	2	6	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0003	3855	33	0	19	7	1	6	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0004	3857	26	2	2	12	1	9	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0005	3855	11	0	0	11	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0006	3856	10	1	1	8	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0007	3853	8	8	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0008	3856	7	6	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0009	3858	7	4	0	1	0	2	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0010	3856	7	6	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0011	3854	7	7	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0012	3856	7	4	2	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0013	3855	7	0	0	7	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0014	3858	5	5	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0015	3856	5	0	4	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	1/0	t0016	3855	4	0	1	0	2	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0017	3856	4	0	0	4	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0018	3858	4	0	0	3	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0019	3855	4	0	0	4	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0020	3855	4	3	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0021	3855	4	4	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0022	3856	3	2	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0023	3830	3	3	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0024	3856	3	3	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0025	3829	3	3	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0026	3854	3	2	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0027	3856	3	0	0	3	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0028	3856	2	1	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0029	3856	2	0	1	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453