JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATA2_chr3_128474427_128493530	0/0	t0004	2028	30	10	5	12	2	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0005	2028	15	8	2	4	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0006	2028	10	1	1	8	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0007	2028	8	0	0	8	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0008	2028	7	0	0	7	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0009	2028	6	0	1	5	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0010	2028	6	1	4	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0011	2028	5	1	2	1	1	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0012	2028	5	5	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0013	2028	4	0	0	4	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0014	2028	4	0	4	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0015	2028	3	0	1	0	1	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0016	2028	3	2	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0017	2028	2	2	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0018	2028	2	0	0	1	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0019	2028	2	2	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0020	2028	2	2	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0021	2028	2	1	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0022	2028	1	0	0	0	1	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0023	2028	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0024	2028	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0025	2028	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0026	2028	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0027	2028	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0028	2028	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0029	2028	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0030	2028	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0031	2028	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0032	2028	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0033	2028	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0034	2028	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0035	2028	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0036	2028	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0037	2028	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	t0038	2028	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128498201	1/1	t0001	1941	290	51	53	134	10	40	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0002	1941	48	19	11	14	3	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0003	1941	23	1	4	17	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0004	1941	19	6	7	4	0	2	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0005	1941	9	0	0	9	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0006	1941	7	0	0	7	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0007	1941	5	5	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0008	1941	4	0	0	4	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0009	1941	3	0	1	0	1	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0010	1941	3	2	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0011	1941	2	1	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0012	1941	2	2	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0013	1941	2	2	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0014	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0015	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201