JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATA2_chr3_128474427_128498201	0/0	t0016	1941	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0017	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0018	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0019	1941	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0020	1941	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0021	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0022	1941	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0023	1941	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0024	1941	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0025	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	t0026	1941	1	1	0	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA3_chr10_8049688_8080198	0/0	t0001	1752	80	3	23	43	3	8	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0002	1750	59	12	27	18	1	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0003	1750	44	1	2	39	0	2	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/1	t0004	1750	24	5	10	0	3	5	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0005	1750	21	0	4	8	3	6	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	1/0	t0006	1749	14	8	2	0	2	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0007	1751	12	9	2	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0008	1751	12	0	1	8	0	3	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0009	1751	8	8	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0010	1751	7	7	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0011	1752	6	0	0	6	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0012	1751	6	4	2	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0013	1749	6	2	2	2	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0014	1753	5	0	1	2	0	2	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0015	1752	5	1	1	3	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0016	1751	5	1	1	0	1	2	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0017	1750	5	2	1	0	2	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0018	1751	4	4	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0019	1750	4	0	0	4	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0020	1749	4	2	0	0	1	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0021	1753	3	0	0	3	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0022	1750	2	0	2	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0023	1752	2	0	1	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0024	1751	2	2	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0025	1751	2	2	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0026	1750	2	2	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0027	1751	1	0	1	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0028	1753	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0029	1750	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0030	1749	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0031	1752	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0032	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0033	1752	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0034	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0035	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0036	1751	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0037	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0038	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0039	1751	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198