JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATA3_chr10_8049688_8080198	0/0	t0040	1750	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0041	1750	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0042	1750	1	0	1	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0043	1749	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0044	1750	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0045	1749	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0046	1750	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0047	1750	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0048	1750	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0049	1749	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0050	1749	1	1	0	0	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0051	1750	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	t0052	1750	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA4_chr8_11699202_11765002	0/1	t0001	2088	63	4	10	40	0	8	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0002	2088	39	12	9	15	0	3	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0003	2088	32	9	1	22	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0004	2088	30	14	0	14	0	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0005	2088	21	0	9	3	2	7	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0006	2088	15	3	7	0	3	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0007	2088	15	2	0	5	0	8	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0008	2088	14	0	10	0	2	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0009	2088	10	1	7	0	1	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0010	2088	9	0	4	0	0	5	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0011	2088	8	0	1	6	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0012	2088	7	1	2	0	2	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0013	2088	5	1	3	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0014	2088	5	0	0	4	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0015	2088	5	5	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	1/0	t0016	2088	4	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0017	2088	4	4	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0018	2088	4	0	0	4	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0019	2088	4	4	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0020	2088	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0021	2088	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0022	2088	3	0	0	3	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0023	2088	3	2	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0024	2088	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0025	2088	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0026	2088	3	3	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0027	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0028	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0029	2088	1	0	0	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0030	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0031	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0032	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0033	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0034	2088	1	0	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0035	2088	1	0	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0036	2088	1	0	0	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0037	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002