JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATA4_chr8_11699202_11765002	0/0	t0038	2088	1	0	0	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0039	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0040	2088	1	0	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0041	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0042	2088	1	0	1	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0043	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0044	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0045	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0046	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0047	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0048	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0049	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0050	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	t0051	2088	1	1	0	0	0	0	copy fasta	GATA4	chr8	11699202	11765002
GATA5_chr20_62458497_62480995	0/0	t0001	1427	149	27	26	69	6	21	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0002	1426	60	3	14	32	3	8	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0003	1427	45	32	7	2	1	3	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/1	t0004	1457	30	5	8	9	2	5	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	1/0	t0005	1427	15	4	3	6	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0006	1427	14	0	0	14	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0007	1427	13	4	0	4	0	5	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0008	1426	6	0	2	2	1	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0009	1427	5	0	5	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0010	1427	5	0	4	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0011	1456	4	0	2	1	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0012	1487	3	3	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0013	1426	2	0	0	2	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0014	1456	2	0	0	0	2	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0015	1427	2	0	2	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0016	1427	2	0	0	2	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0017	1517	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0018	1457	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0019	1426	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0020	1427	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0021	1487	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0022	1427	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0023	1426	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0024	1427	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0025	1416	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0026	1576	1	0	0	0	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0027	1547	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0028	1517	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0029	1456	1	0	0	0	1	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0030	1426	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0031	1456	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0032	1427	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0033	1426	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0034	1427	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0035	1456	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0036	1417	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995