JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATA5_chr20_62458497_62480995	0/0	t0037	1427	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0038	1427	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0039	1414	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0040	1427	1	0	1	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	t0041	1427	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA6_chr18_22164589_22207528	1/1	t0001	1837	139	38	17	61	7	14	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0002	1837	100	51	21	17	2	9	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0003	1837	36	0	5	21	1	9	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0004	1837	3	3	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0005	1837	2	2	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0006	1837	1	1	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0007	1837	1	1	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0008	1837	1	0	1	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0009	1837	1	0	0	1	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0010	1837	1	0	0	1	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	t0011	1837	1	0	0	1	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATAD1_chr7_92442482_92465075	1/1	t0001	3762	168	34	36	68	7	21	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0002	3765	51	1	3	45	1	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0003	3766	19	0	5	10	3	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0004	3763	12	2	3	6	1	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0005	3765	12	12	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0006	3760	9	9	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0007	3764	8	2	1	1	1	3	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0008	3756	7	7	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0009	3766	4	0	0	0	0	4	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0010	3765	3	0	0	3	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0011	3766	3	0	1	2	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0012	3762	2	0	2	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0013	3765	2	2	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0014	3765	2	0	1	0	1	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0015	3765	2	2	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0016	3765	2	0	0	2	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0017	3762	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0018	3765	1	0	0	1	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0019	3766	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0020	3762	1	0	0	1	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0021	3765	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0022	3765	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0023	3762	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0024	3762	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0025	3762	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0026	3762	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0027	3762	1	0	0	0	1	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0028	3764	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0029	3763	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0030	3764	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0031	3760	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0032	3765	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0033	3766	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0034	3765	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075