JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATAD1_chr7_92442482_92465075	0/0	t0035	3762	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0036	3766	1	0	0	0	1	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0037	3762	1	0	0	1	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0038	3765	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0039	3764	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	t0040	3762	1	0	0	0	0	1	copy fasta	GATAD1	chr7	92442482	92465075
GATAD2A_chr19_19400675_19513932	0/1	t0001	3810	90	21	16	37	5	10	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0002	3810	34	3	8	13	3	7	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0003	3810	28	3	11	14	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0004	3811	28	9	7	0	3	9	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0005	3807	13	13	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0006	3809	8	1	0	3	0	4	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0007	3810	7	5	1	0	0	1	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0008	3816	6	0	0	6	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0009	3811	6	4	0	2	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0010	3815	6	0	1	5	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0011	3811	5	1	1	2	0	1	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0012	3809	5	1	0	1	0	3	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0013	3808	5	0	0	3	0	2	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0014	3807	4	4	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0015	3810	3	3	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0016	3809	3	3	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0017	3810	3	3	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0018	3808	2	0	0	0	0	2	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0019	3810	2	2	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0020	3808	2	2	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0021	3811	2	0	0	2	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0022	3810	2	2	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0023	3816	2	0	0	2	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0024	3811	2	0	2	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0025	3810	2	0	0	2	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0026	3810	2	0	0	2	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0027	3811	2	0	2	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0028	3809	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0029	3807	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0030	3809	1	0	0	0	0	1	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0031	3810	1	0	0	0	0	1	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0032	3807	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0033	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0034	3811	1	0	0	0	1	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0035	3822	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0036	3814	1	0	1	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0037	3808	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0038	3811	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0039	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0040	3809	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0041	3811	1	0	1	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0042	3811	1	0	1	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0043	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0044	3810	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932