JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATAD2A_chr19_19400675_19513932	0/0	t0045	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0046	3811	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0047	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0048	3809	1	0	0	0	0	1	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0049	3809	1	1	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	t0050	3810	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	1/0	t0051	3810	1	0	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2B_chr1_153799725_153927972	0/0	t0001	5693	79	7	20	42	1	9	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0002	5694	47	0	7	36	3	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/1	t0003	5692	47	12	17	6	2	9	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0004	5694	34	11	0	14	0	9	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0005	5695	10	9	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0006	5694	8	0	1	7	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0007	5692	7	1	3	3	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0008	5692	7	7	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0009	5694	7	0	7	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0010	5694	5	0	0	5	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0011	5694	5	4	0	0	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0012	5695	5	5	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0013	5693	4	0	1	2	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0014	5694	4	0	0	4	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0015	5694	4	4	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0016	5695	3	3	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0017	5691	3	2	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0018	5693	3	0	0	3	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0019	5695	3	3	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0020	5694	2	0	0	1	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0021	5694	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0022	5695	2	0	0	1	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0023	5695	2	0	0	2	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0024	5693	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0025	5694	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0026	5694	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0027	5695	2	0	1	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0028	5692	2	1	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0029	5692	2	0	0	0	0	2	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0030	5693	2	1	0	0	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0031	5694	2	0	0	1	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0032	5693	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0033	5694	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0034	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0035	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0036	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0037	5695	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0038	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0039	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0040	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0041	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0042	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0043	5692	1	0	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972