JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATAD2B_chr1_153799725_153927972	0/0	t0044	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0045	5693	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0046	5692	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0047	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0048	5694	1	0	0	0	1	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0049	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0050	5694	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0051	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0052	5691	1	0	0	0	1	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0053	5691	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0054	5692	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0055	5693	1	0	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0056	5693	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0057	5695	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0058	5694	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0059	5695	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0060	5695	1	0	0	0	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0061	5695	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0062	5695	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0063	5693	1	0	1	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0064	5694	1	0	0	0	0	1	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0065	5696	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0066	5694	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0067	5693	1	1	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0068	5692	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	t0069	5670	1	0	0	1	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATB_chr4_151665504_151766007	0/0	t0001	696	215	84	26	81	8	16	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	1/1	t0002	696	105	8	26	55	2	12	copy fasta	GATB	chr4	151665504	151766007
GATC_chr12_120441444_120468749	1/1	t0001	3828	100	2	15	63	9	9	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0002	3829	83	6	19	49	1	8	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0003	3834	64	25	6	24	2	7	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0004	3835	29	0	13	12	2	2	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0005	3834	21	21	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0006	3829	16	0	4	10	0	2	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0007	3834	10	0	3	7	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0008	3834	9	8	1	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0009	3829	9	6	3	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0010	3835	7	0	0	1	2	4	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0011	3834	7	7	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0012	3828	4	0	0	0	0	4	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0013	3829	3	0	2	0	0	1	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0014	3834	3	3	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0015	3828	3	0	1	0	2	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0016	3834	3	3	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0017	3829	3	3	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0018	3829	3	0	0	3	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0019	3828	2	0	2	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0020	3833	2	2	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0021	3829	2	0	0	2	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0022	3835	2	0	0	2	0	0	copy fasta	GATC	chr12	120441444	120468749