JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATC_chr12_120441444_120468749	0/0	t0023	3835	2	0	0	2	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0024	3829	2	0	1	0	0	1	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0025	3835	2	0	0	0	0	2	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0026	3834	2	0	0	2	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0027	3829	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0028	3833	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0029	3834	1	0	0	0	0	1	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0030	3834	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0031	3829	1	0	1	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0032	3834	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0033	3834	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0034	3833	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0035	3830	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0036	3833	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0037	3833	1	0	1	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0038	3829	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0039	3829	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0040	3834	1	0	0	0	0	1	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	t0041	3834	1	1	0	0	0	0	copy fasta	GATC	chr12	120441444	120468749
GATD1_chr11_762222_782487	1/0	t0001	3701	89	7	22	41	4	14	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0002	3704	66	2	14	47	1	2	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/1	t0003	3704	64	12	21	18	5	7	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0004	3705	60	10	3	39	0	8	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0005	3705	40	23	8	6	1	2	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0006	3705	19	6	4	7	1	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0007	3705	8	8	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0008	3705	5	0	1	4	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0009	3702	5	0	0	4	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0010	3706	4	4	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0011	3704	3	0	2	0	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0012	3700	3	3	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0013	3705	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0014	3706	2	0	0	1	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0015	3705	2	1	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0016	3704	2	2	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0017	3705	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0018	3706	2	1	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0019	3705	2	0	0	0	0	2	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0020	3705	2	0	0	0	2	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0021	3700	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0022	3701	2	0	0	2	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0023	3701	2	1	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0024	3701	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0025	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0026	3704	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0027	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0028	3701	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0029	3701	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0030	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0031	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487