JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GATD1_chr11_762222_782487	0/0	t0032	3705	1	0	0	0	1	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0033	3705	1	0	0	0	1	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0034	3701	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0035	3705	1	0	0	0	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0036	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0037	3704	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0038	3704	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0039	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0040	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0041	3701	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0042	3701	1	0	0	0	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0043	3706	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0044	3706	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0045	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0046	3701	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0047	3706	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0048	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0049	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0050	3706	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0051	3705	1	0	0	0	1	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0052	3701	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0053	3701	1	0	0	0	1	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0054	3701	1	0	0	0	0	1	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0055	3701	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0056	3702	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0057	3702	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0058	3701	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0059	3701	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0060	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0061	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0062	3705	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0063	3705	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0064	3701	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	t0065	3705	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD3_chr21_44128683_44150711	0/0	t0001	778	32	23	4	5	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0002	777	7	7	0	0	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0003	778	7	7	0	0	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0004	773	4	0	2	2	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0005	778	2	1	1	0	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0006	773	1	0	1	0	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	t0007	777	1	0	0	1	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATM_chr15_45356124_45383544	0/0	t0001	1079	115	25	24	54	2	10	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	1/1	t0002	1077	67	6	18	17	10	14	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0003	1079	45	40	4	0	0	1	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0004	1079	44	2	7	21	1	13	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0005	1079	10	1	8	0	1	0	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0006	1079	6	5	1	0	0	0	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0007	1079	4	4	0	0	0	0	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0008	1079	3	3	0	0	0	0	copy fasta	GATM	chr15	45356124	45383544
GATM_chr15_45356124_45383544	0/0	t0009	1079	2	2	0	0	0	0	copy fasta	GATM	chr15	45356124	45383544