Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH6A1_chr14_74051847_74089453	0/0	t0030	3858	2	2	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0031	3854	2	0	0	2	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0032	3856	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0033	60	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0034	3855	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0035	3857	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0036	3857	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0037	3857	1	0	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0038	3856	1	0	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0039	3857	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0040	3857	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0041	3857	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0042	3856	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0043	3857	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0044	3829	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0045	3829	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0046	3830	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0047	3857	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0048	3828	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0049	3855	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/1	t0050	3855	1	0	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0051	3856	1	0	0	0	1	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0052	3855	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0053	3855	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0054	3855	1	0	1	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0055	3865	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0056	3856	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0057	3857	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0058	3855	1	0	0	0	1	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0059	3854	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0060	3856	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	t0061	3856	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH7A1_chr5_126536841_126600219	0/0	t0001	3148	99	13	28	52	2	4	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0002	3147	69	3	7	53	1	5	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/1	t0003	3148	32	1	4	16	2	8	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0004	3148	30	6	9	9	3	3	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0005	3148	27	0	3	9	2	13	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0006	3149	23	17	1	4	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0007	3147	7	6	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0008	3147	7	1	2	4	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0009	3145	6	6	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0010	3149	6	0	0	5	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0011	3147	6	4	0	1	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0012	3149	5	3	1	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0013	3148	4	4	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0014	3145	4	4	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0015	3149	4	0	0	3	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0016	3149	3	0	0	0	0	3	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0017	3148	3	3	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0018	3147	3	0	0	3	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219