JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBA1_chr1_155229452_155246249	0/1	t0001	681	370	75	61	171	17	45	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	t0002	681	15	15	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	t0003	681	4	0	2	0	1	1	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	t0004	681	2	1	0	1	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	t0005	681	1	0	1	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA1_chr1_155229452_155246249	0/0	t0006	681	1	1	0	0	0	0	copy fasta	GBA1	chr1	155229452	155246249
GBA2_chr9_35731866_35754228	1/1	t0001	828	272	68	41	130	6	25	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0002	828	120	18	25	54	4	19	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0003	828	16	2	0	14	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0004	828	3	2	1	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0005	828	3	0	0	3	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0006	802	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0007	828	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0008	828	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0009	828	1	0	0	1	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0010	828	1	0	1	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBA2_chr9_35731866_35754228	0/0	t0011	828	1	1	0	0	0	0	copy fasta	GBA2	chr9	35731866	35754228
GBE1_chr3_81484703_81766645	0/0	t0001	834	82	19	17	38	2	6	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/1	t0002	834	72	26	7	35	1	2	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0003	834	55	5	20	20	2	8	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0004	834	34	7	10	14	1	2	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0005	834	33	5	8	16	2	2	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0006	834	6	3	1	2	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0007	844	6	6	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0008	844	4	4	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0009	834	2	0	0	2	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0010	834	2	2	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0011	834	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0012	834	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0013	834	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0014	834	1	0	1	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0015	834	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0016	834	1	1	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	1/0	t0017	833	1	0	0	0	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBE1_chr3_81484703_81766645	0/0	t0018	834	1	0	0	1	0	0	copy fasta	GBE1	chr3	81484703	81766645
GBF1_chr10_102240532_102387896	0/0	t0001	821	160	63	29	49	7	12	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	1/1	t0002	821	91	12	22	40	3	12	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	t0003	821	68	2	13	44	1	8	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	t0004	821	6	6	0	0	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	t0005	821	2	1	0	0	1	0	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	t0006	821	2	0	0	0	0	2	copy fasta	GBF1	chr10	102240532	102387896
GBF1_chr10_102240532_102387896	0/0	t0007	821	1	0	0	1	0	0	copy fasta	GBF1	chr10	102240532	102387896
GBGT1_chr9_133147948_133168914	1/0	t0001	911	259	64	54	95	17	28	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/1	t0002	911	158	12	27	102	0	16	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0003	911	10	9	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0004	911	4	4	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0005	911	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0006	911	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0007	911	2	2	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0008	911	1	0	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914