JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBGT1_chr9_133147948_133168914	0/0	t0009	911	1	0	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0010	911	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0011	911	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0012	911	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0013	911	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	t0014	911	1	0	0	0	1	0	copy fasta	GBGT1	chr9	133147948	133168914
GBP1_chr1_89047319_89070208	0/0	t0001	1105	149	22	25	94	1	7	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0002	1105	101	15	24	45	8	9	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/1	t0003	1105	100	17	16	42	7	17	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0004	1105	26	25	1	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0005	1105	11	6	4	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0006	1105	8	0	0	8	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0007	1105	5	5	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0008	1104	4	0	3	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	1/0	t0009	1105	3	0	1	0	1	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0010	1105	2	0	0	2	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0011	1105	2	0	0	2	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0012	1104	2	0	0	2	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0013	1105	2	2	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0014	1105	2	2	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0015	1105	2	0	0	2	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0016	1105	2	0	0	0	0	2	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0017	1104	2	0	0	1	1	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0018	1105	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0019	1105	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0020	1105	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0021	1105	1	0	0	0	0	1	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0022	1105	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0023	1104	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	t0024	1105	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP2_chr1_89101132_89131114	0/1	t0001	2314	124	9	22	71	5	16	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0002	2314	112	19	19	66	2	6	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	1/0	t0003	2313	102	10	26	45	7	13	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0004	2314	17	16	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0005	2314	10	10	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0006	2313	8	2	4	2	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0007	2306	6	6	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0008	2314	4	4	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0009	2314	3	0	0	0	2	1	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0010	2314	3	3	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0011	2313	3	3	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0012	2314	2	0	0	0	0	2	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0013	2313	2	0	0	0	2	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0014	2314	2	2	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0015	2314	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0016	2314	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0017	2313	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0018	2313	1	0	0	0	0	1	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0019	2313	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0020	2314	1	0	0	0	0	1	copy fasta	GBP2	chr1	89101132	89131114