JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBP2_chr1_89101132_89131114	0/0	t0021	2314	1	0	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0022	2314	1	0	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0023	2314	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0024	2314	1	0	0	0	0	1	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0025	2314	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0026	2306	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0027	2313	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0028	2314	1	0	0	0	0	1	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0029	2313	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	t0030	2314	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP3_chr1_89001680_89027866	1/1	t0001	1250	166	16	30	78	12	28	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0002	1250	128	19	20	82	1	6	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0003	1250	67	4	21	25	5	12	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0004	1250	28	26	1	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0005	1250	22	22	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0006	1250	12	0	0	12	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0007	1250	3	3	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0008	1250	3	3	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0009	1250	3	0	0	3	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0010	1250	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0011	1250	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0012	1233	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	t0013	1250	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP4_chr1_89176144_89203942	0/1	t0001	4221	117	22	16	51	6	21	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0002	4221	108	22	23	55	2	6	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	1/0	t0003	4219	89	9	14	45	7	13	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0004	4220	8	6	1	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0005	4220	8	7	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0006	4221	6	0	0	5	1	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0007	4222	6	0	3	3	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0008	4220	6	6	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0009	4221	6	6	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0010	4221	5	1	2	2	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0011	4221	4	4	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0012	4221	3	0	1	2	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0013	4219	3	3	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0014	4220	3	3	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0015	4222	3	0	0	2	0	1	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0016	4219	2	0	2	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0017	4219	2	2	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0018	4220	2	2	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0019	4221	2	0	2	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0020	4221	1	0	0	0	0	1	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0021	4221	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0022	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0023	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0024	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0025	4222	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0026	4221	1	0	0	0	0	1	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0027	4221	1	0	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942