JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBP4_chr1_89176144_89203942	0/0	t0028	4219	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0029	4219	1	0	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0030	4220	1	0	0	0	0	1	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0031	4221	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0032	4219	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0033	4221	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0034	4219	1	0	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0035	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0036	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0037	4220	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	t0038	4221	1	0	0	1	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP5_chr1_89251189_89277860	1/0	t0001	5052	121	8	24	78	2	8	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/1	t0002	5053	106	18	19	41	6	21	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0003	5053	61	13	10	27	2	9	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0004	5053	22	0	3	19	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0005	5052	19	2	5	10	0	2	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0006	5053	11	11	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0007	5053	9	0	5	0	3	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0008	5053	8	0	0	8	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0009	5053	7	2	1	4	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0010	5053	6	6	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0011	5053	6	5	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0012	5052	5	4	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0013	5053	5	0	0	5	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0014	5055	4	4	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0015	5053	4	0	0	4	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0016	5053	3	3	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0017	5053	3	3	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0018	5053	3	0	0	3	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0019	5053	3	0	0	0	2	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0020	5052	2	0	0	2	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0021	5053	2	0	0	0	2	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0022	5053	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0023	5053	2	0	0	2	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0024	5052	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0025	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0026	5053	1	0	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0027	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0028	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0029	5053	1	0	0	1	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0030	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0031	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0032	5052	1	0	0	1	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0033	5052	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0034	5052	1	0	0	1	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0035	5052	1	0	0	0	0	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0036	5053	1	0	0	0	0	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0037	5053	1	0	0	0	1	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0038	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	t0039	5053	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860