JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBP5_chr1_89251189_89277860	0/0	t0040	5052	1	1	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP6_chr1_89359059_89393160	0/1	t0001	2785	189	40	38	74	13	23	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0002	2785	133	35	20	69	2	7	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	1/0	t0003	2784	60	0	9	44	1	5	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0004	2784	16	2	1	13	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0005	2785	5	0	0	5	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0006	2786	5	0	0	5	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0007	2784	4	4	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0008	2786	4	1	0	2	0	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0009	2785	3	3	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0010	2785	3	0	0	3	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0011	2784	2	0	0	2	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0012	2784	2	1	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0013	2785	2	2	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0014	2785	2	0	2	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0015	2785	2	0	1	0	0	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0016	2785	2	0	2	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0017	2785	2	0	0	0	0	2	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0018	2785	2	0	1	0	0	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0019	2785	1	0	0	0	0	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0020	2784	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0021	2784	1	0	0	0	0	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0022	2785	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0023	2785	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0024	2785	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0025	2785	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0026	2785	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0027	2785	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0028	2785	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0029	2785	1	1	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0030	2785	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0031	2786	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	t0032	2766	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP7_chr1_89126742_89181003	0/1	t0001	510	238	39	42	125	8	23	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	1/0	t0002	510	104	27	20	37	7	12	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	t0003	510	29	22	5	2	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	t0004	510	3	0	1	0	1	1	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	t0005	510	1	0	0	0	0	1	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	t0006	510	1	0	0	0	0	1	copy fasta	GBP7	chr1	89126742	89181003
GBX1_chr7_151143009_151172694	1/1	t0001	727	394	85	70	188	16	33	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	t0002	727	4	4	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	t0003	727	1	0	0	0	0	1	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	t0004	727	1	1	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX2_chr2_236160236_236173386	1/1	t0001	1094	150	5	27	85	5	26	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0002	1102	93	12	9	44	8	20	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0003	1102	24	23	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0004	1102	11	10	0	0	1	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0005	1101	9	9	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0006	1094	9	0	7	0	2	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0007	1102	7	7	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386