JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GBX2_chr2_236160236_236173386	0/0	t0008	1107	5	5	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0009	1102	5	5	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0010	1107	4	3	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0011	1102	4	3	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0012	1099	4	4	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0013	1106	3	3	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0014	1101	2	2	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0015	1093	2	0	0	0	2	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0016	1094	2	2	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0017	1106	1	1	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0018	1102	1	1	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0019	1102	1	0	0	0	0	1	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0020	1107	1	1	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0021	1102	1	1	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0022	1094	1	0	0	0	0	1	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0023	1094	1	1	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	t0024	1102	1	0	0	1	0	0	copy fasta	GBX2	chr2	236160236	236173386
GCAT_chr22_37802934_37821897	0/1	t0001	214	278	70	40	129	11	27	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	1/0	t0002	214	108	16	31	40	6	14	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	t0003	214	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	t0004	214	1	0	1	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	t0005	214	1	0	0	0	0	1	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	t0006	214	1	0	0	0	1	0	copy fasta	GCAT	chr22	37802934	37821897
GCA_chr2_162339132_162368123	1/1	t0001	2998	256	57	45	112	9	31	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0002	2998	30	17	5	8	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0003	2997	28	0	10	18	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0004	2998	16	0	3	13	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0005	2998	7	7	0	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0006	2998	7	0	1	0	5	1	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0007	2998	4	0	1	0	1	2	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0008	2998	3	3	0	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0009	2998	2	2	0	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0010	2998	2	0	2	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0011	2997	2	0	0	2	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0012	2998	2	0	1	1	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0013	2998	1	1	0	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0014	2998	1	1	0	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0015	2998	1	0	0	1	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0016	2998	1	0	0	0	1	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0017	2998	1	0	0	1	0	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0018	2998	1	0	0	0	0	1	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	t0019	2998	1	0	0	0	0	1	copy fasta	GCA	chr2	162339132	162368123
GCC1_chr7_127575628_127590596	1/0	t0001	1801	170	55	42	37	6	29	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0002	1801	111	1	16	78	5	11	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0003	1801	28	11	4	8	2	3	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/1	t0004	1801	15	1	4	9	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0005	1801	15	0	2	13	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0006	1801	9	6	0	1	0	2	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0007	1801	6	5	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0008	1801	6	5	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596