JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCC1_chr7_127575628_127590596	0/0	t0009	1801	4	4	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0010	1802	3	1	2	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0011	1801	3	1	1	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0012	1801	2	0	2	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0013	1801	2	2	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0014	1802	1	0	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0015	1801	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0016	1802	1	0	0	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0017	1802	1	0	0	0	0	1	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0018	1801	1	0	0	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0019	1801	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0020	1801	1	0	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0021	1801	1	0	0	1	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0022	1801	1	0	1	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0023	1801	1	0	0	0	1	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0024	1801	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	t0025	1801	1	1	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC2_chr2_108444206_108514415	0/0	t0001	1853	74	5	15	42	4	8	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0002	1856	41	11	7	13	2	8	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0003	1856	33	5	6	9	2	11	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0004	1856	14	1	6	0	2	5	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0005	1856	10	8	2	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0006	1856	9	0	1	6	0	2	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0007	1856	7	7	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/1	t0008	1858	7	0	2	0	2	2	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0009	1856	6	5	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0010	1856	6	5	0	0	0	1	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0011	1856	5	4	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0012	1856	4	4	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0013	1851	3	3	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0014	1856	3	0	0	3	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0015	1856	3	0	3	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0016	1856	3	0	0	3	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0017	1856	3	0	0	0	0	3	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0018	1856	3	3	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0019	1856	2	1	0	0	0	1	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0020	1853	2	1	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0021	1853	2	1	0	0	0	1	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0022	1856	2	2	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0023	1851	2	2	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0024	1856	2	2	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0025	1858	2	2	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0026	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0027	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0028	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0029	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0030	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0031	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0032	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0033	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415