JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCC2_chr2_108444206_108514415	0/0	t0034	1853	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0035	1853	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0036	1858	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0037	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0038	1858	1	0	0	0	1	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0039	1856	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0040	1856	1	0	0	0	1	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	1/0	t0041	1855	1	0	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0042	1856	1	0	0	0	1	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0043	1856	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0044	1856	1	0	0	0	1	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0045	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0046	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0047	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0048	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0049	1856	1	0	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0050	1856	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0051	1856	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0052	1851	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	t0053	1858	1	0	1	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCDH_chr19_12886160_12904999	0/0	t0001	536	188	60	23	85	6	14	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0002	536	95	19	32	30	2	12	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	1/1	t0003	536	83	11	23	25	10	12	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0004	536	3	3	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0005	536	2	0	0	2	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0006	536	1	1	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0007	536	1	1	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCDH_chr19_12886160_12904999	0/0	t0008	536	1	1	0	0	0	0	copy fasta	GCDH	chr19	12886160	12904999
GCFC2_chr2_75657705_75715915	1/1	t0001	2022	182	15	37	103	11	14	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0002	2022	61	9	11	25	3	13	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0003	2022	57	15	9	29	0	4	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0004	2023	51	30	5	10	2	4	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0005	2022	15	14	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0006	2022	5	0	0	4	0	1	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0007	2024	4	2	0	0	0	2	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0008	2023	3	0	0	1	0	2	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0009	2022	3	3	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0010	2022	2	0	0	2	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0011	2022	2	2	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0012	2022	2	0	0	2	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0013	2022	2	0	0	0	0	2	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0014	2023	2	0	0	2	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0015	2023	2	0	0	2	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0016	2022	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0017	2022	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0018	2023	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0019	2022	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0020	2022	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0021	2023	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0022	2021	1	0	0	1	0	0	copy fasta	GCFC2	chr2	75657705	75715915