JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCFC2_chr2_75657705_75715915	0/0	t0023	2022	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0024	2024	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0025	2022	1	0	1	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCFC2_chr2_75657705_75715915	0/0	t0026	2024	1	1	0	0	0	0	copy fasta	GCFC2	chr2	75657705	75715915
GCGR_chr17_81799150_81819008	1/1	t0001	597	344	91	62	136	16	37	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	t0002	597	57	3	20	31	2	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	t0003	597	3	0	0	2	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	t0004	597	2	2	0	0	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	t0005	597	1	0	0	0	0	1	copy fasta	GCGR	chr17	81799150	81819008
GCGR_chr17_81799150_81819008	0/0	t0006	561	1	0	0	1	0	0	copy fasta	GCGR	chr17	81799150	81819008
GCG_chr2_162137882_162157247	1/1	t0001	582	418	84	74	198	16	44	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0002	582	7	7	0	0	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0003	582	4	4	0	0	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0004	582	4	0	0	4	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0005	582	1	1	0	0	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0006	582	1	1	0	0	0	0	copy fasta	GCG	chr2	162137882	162157247
GCG_chr2_162137882_162157247	0/0	t0007	582	1	1	0	0	0	0	copy fasta	GCG	chr2	162137882	162157247
GCH1_chr14_54837017_54907826	0/1	t0001	2164	166	26	31	72	10	26	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0002	2164	91	14	23	49	1	4	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0003	2164	13	9	0	2	0	2	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0004	2161	12	4	1	6	0	1	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0005	2163	12	10	2	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0006	2164	7	0	5	0	2	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0007	2166	6	0	0	0	1	5	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0008	2164	6	4	0	1	0	1	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	1/0	t0009	2164	4	3	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0010	2164	3	3	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0011	2164	3	3	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0012	2161	3	3	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0013	2161	2	1	1	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0014	2164	2	0	0	2	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0015	2163	2	2	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0016	2164	2	0	0	2	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0017	2164	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0018	2164	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0019	2164	1	0	1	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0020	2164	1	0	0	1	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0021	2161	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0022	2161	1	0	0	0	0	1	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0023	2164	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0024	2164	1	0	1	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0025	2164	1	0	1	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0026	2164	1	0	0	1	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0027	2161	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCH1_chr14_54837017_54907826	0/0	t0028	2164	1	1	0	0	0	0	copy fasta	GCH1	chr14	54837017	54907826
GCHFR_chr15_40759068_40772708	1/1	t0001	473	352	53	63	179	14	41	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0002	473	50	28	8	7	2	5	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0003	473	6	6	0	0	0	0	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0004	473	2	0	0	2	0	0	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0005	473	2	0	1	0	0	1	copy fasta	GCHFR	chr15	40759068	40772708