JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCHFR_chr15_40759068_40772708	0/0	t0006	473	1	0	0	1	0	0	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0007	473	1	0	0	1	0	0	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0008	473	1	1	0	0	0	0	copy fasta	GCHFR	chr15	40759068	40772708
GCHFR_chr15_40759068_40772708	0/0	t0009	473	1	0	0	0	0	1	copy fasta	GCHFR	chr15	40759068	40772708
GCKR_chr2_27491839_27528684	1/1	t0001	312	311	72	61	124	12	40	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	t0002	312	11	8	3	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	t0003	312	2	2	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCK_chr7_44139275_44194439	1/0	t0001	1348	137	16	21	69	7	23	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0002	1347	136	42	15	64	4	11	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/1	t0003	1348	51	1	22	19	5	3	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0004	1347	17	16	1	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0005	1347	11	9	2	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0006	1347	6	0	0	6	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0007	1348	6	0	2	4	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0008	1348	6	0	1	5	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0009	1348	4	0	0	4	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0010	1347	3	0	0	3	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0011	1347	3	0	0	3	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0012	1348	3	3	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0013	1347	2	2	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0014	1348	2	0	0	0	2	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0015	1348	1	0	0	1	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0016	1347	1	1	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0017	1348	1	0	0	0	0	1	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0018	1348	1	0	0	1	0	0	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	t0019	1347	1	0	0	1	0	0	copy fasta	GCK	chr7	44139275	44194439
GCLC_chr6_53492341_53550101	1/1	t0001	1872	88	11	14	43	5	13	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0002	1868	49	3	7	32	2	5	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0003	1878	42	10	8	23	0	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0004	1875	40	4	10	25	0	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0005	1868	37	5	4	28	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0006	1869	35	2	4	22	0	7	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0007	1868	24	12	4	0	2	6	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0008	1874	19	7	5	5	1	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0009	1874	10	2	1	7	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0010	1875	9	0	3	0	3	3	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0011	1874	8	3	5	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0012	1877	5	5	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0013	1872	5	0	0	5	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0014	1878	4	1	2	0	0	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0015	1874	3	3	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0016	1871	3	0	1	0	1	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0017	1881	2	2	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0018	1878	2	0	0	2	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0019	1874	2	2	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0020	1871	2	0	0	0	0	2	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0021	1868	2	2	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0022	1869	2	0	0	2	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0023	1868	2	2	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0024	1870	2	0	0	2	0	0	copy fasta	GCLC	chr6	53492341	53550101