Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALDH7A1_chr5_126536841_126600219	0/0	t0019	3146	3	1	0	2	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0020	3147	2	0	0	0	0	2	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0021	3145	2	2	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0022	3145	2	2	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0023	3145	2	2	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0024	3145	2	2	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0025	3148	2	0	0	2	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0026	3148	2	0	2	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0027	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	1/0	t0028	3146	1	0	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0029	3145	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0030	3148	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0031	3147	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0032	3147	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0033	3148	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0034	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0035	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0036	3146	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0037	3147	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0038	3144	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0039	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0040	3145	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0041	3145	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0042	3147	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0043	3145	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0044	3148	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0045	3148	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0046	3148	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0047	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0048	3146	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0049	3147	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0050	3147	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	t0051	3146	1	1	0	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH8A1_chr6_134912393_134955101	1/1	t0001	1071	326	67	56	146	17	38	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0002	1072	11	11	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0003	1071	9	0	5	4	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0004	1071	8	6	2	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0005	1072	5	3	2	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0006	1071	2	2	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0007	1071	2	0	0	2	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0008	1072	2	2	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0009	1071	1	0	0	0	1	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0010	1071	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0011	1071	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0012	1072	1	0	1	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	t0013	1072	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH9A1_chr1_165657216_165703562	1/1	t0001	839	164	52	46	28	10	26	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0002	839	137	24	23	72	3	15	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0003	839	18	7	4	4	1	2	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	t0004	835	6	6	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562