JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCLC_chr6_53492341_53550101	0/0	t0025	1868	2	0	0	2	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0026	1868	2	2	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0027	1869	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0028	1873	1	0	1	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0029	1878	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0030	1877	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0031	1877	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0032	1874	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0033	1873	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0034	1874	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0035	1875	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0036	1875	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0037	1875	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0038	1872	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0039	1872	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0040	1872	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0041	1872	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0042	1868	1	0	1	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0043	1867	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0044	1867	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0045	1868	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0046	1869	1	0	0	0	0	1	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0047	1869	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0048	1874	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0049	1872	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0050	1868	1	1	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	t0051	1868	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLM_chr1_93880199_93914430	0/0	t0001	4060	87	9	8	52	6	12	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0002	4062	65	9	18	34	0	4	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	1/0	t0003	4059	42	5	7	16	4	9	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0004	4060	19	0	0	18	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0005	4063	16	1	2	10	0	3	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/1	t0006	4062	14	8	4	0	1	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0007	4062	13	12	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0008	4060	12	1	10	0	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0009	4063	10	4	6	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0010	4063	9	7	1	0	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0011	4061	8	0	1	7	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0012	4062	7	0	1	6	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0013	4059	5	0	0	5	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0014	4060	5	4	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0015	4063	4	4	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0016	4066	4	4	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0017	4060	3	0	3	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0018	4063	3	3	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0019	4060	3	0	0	2	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0020	4060	3	0	1	0	2	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0021	4059	3	0	1	0	0	2	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0022	4060	3	0	0	3	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0023	4059	3	3	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430