JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCLM_chr1_93880199_93914430	0/0	t0024	4059	3	3	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0025	4066	2	2	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0026	4060	2	0	0	0	0	2	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0027	4060	2	0	1	0	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0028	4062	2	2	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0029	4060	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0030	4060	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0031	4060	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0032	4059	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0033	4063	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0034	4062	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0035	4064	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0036	4064	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0037	4063	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0038	4062	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0039	4059	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0040	4059	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0041	4060	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0042	4059	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0043	4060	1	0	0	0	0	1	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0044	4059	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0045	4059	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0046	4060	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0047	4060	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0048	4062	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0049	4063	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0050	4063	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0051	4062	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0052	4062	1	0	0	0	1	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0053	4062	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0054	4064	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0055	4061	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0056	4062	1	1	0	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0057	4049	1	0	0	1	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	t0058	4062	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCM1_chr6_53121961_53153841	0/1	t0001	1478	134	14	34	66	4	15	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0002	1479	60	6	17	35	0	2	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0003	1477	32	11	3	13	2	3	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0004	1466	17	0	0	17	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0005	1469	17	10	3	1	2	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	1/0	t0006	1470	16	9	5	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0007	1470	15	3	5	4	2	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0008	1470	15	0	2	12	1	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0009	1480	14	7	1	3	0	3	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0010	1468	12	0	0	12	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0011	1467	8	5	1	2	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0012	1475	8	8	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0013	1476	7	4	0	2	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0014	1485	7	2	2	3	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0015	1468	6	2	0	2	0	2	copy fasta	GCM1	chr6	53121961	53153841