JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GCM1_chr6_53121961_53153841	0/0	t0016	1481	6	5	1	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0017	1484	6	0	0	6	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0018	1479	6	0	1	4	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0019	1480	4	0	1	3	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0020	1478	3	0	0	3	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0021	1457	2	0	2	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0022	1477	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0023	1470	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0024	1469	1	0	0	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0025	1470	1	0	0	0	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0026	1470	1	0	0	0	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0027	1470	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0028	1478	1	0	0	0	0	1	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0029	1479	1	0	0	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0030	1483	1	0	0	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0031	1486	1	0	0	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0032	1487	1	0	1	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0033	1488	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0034	1489	1	0	0	0	1	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0035	1469	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0036	1470	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0037	1479	1	0	0	1	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	t0038	1470	1	0	1	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM2_chr6_10868223_10887041	0/1	t0001	1021	245	33	39	136	8	28	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0002	1021	76	4	12	48	6	6	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0003	1021	72	36	13	15	4	4	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0004	1021	8	8	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0005	1021	7	6	0	0	0	1	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	1/0	t0006	1021	7	5	1	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0007	1021	4	3	1	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0008	1017	4	4	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0009	1021	1	0	0	1	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0010	1021	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	t0011	1021	1	0	0	0	0	1	copy fasta	GCM2	chr6	10868223	10887041
GCN1_chr12_120122202_120199715	1/1	t0001	666	166	43	21	79	5	16	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	t0002	666	143	41	29	52	5	16	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	t0003	666	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	t0004	666	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	t0005	666	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCNA_chrX_71573437_71618583	1/1	t0001	690	253	58	45	109	9	30	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	t0002	690	8	8	0	0	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	t0003	690	2	0	0	2	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	t0004	689	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNA_chrX_71573437_71618583	0/0	t0005	690	1	0	0	1	0	0	copy fasta	GCNA	chrX	71573437	71618583
GCNT1_chr9_76454182_76512416	0/0	t0001	4282	93	14	17	40	5	17	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/1	t0002	4280	78	1	11	55	4	6	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	1/0	t0003	4280	41	5	13	10	5	7	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0004	4280	26	8	9	2	0	7	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0005	4283	19	3	6	6	3	1	copy fasta	GCNT1	chr9	76454182	76512416
GCNT1_chr9_76454182_76512416	0/0	t0006	4284	17	2	2	11	0	2	copy fasta	GCNT1	chr9	76454182	76512416